Tools and Data

• MethSpec: a simple and efficient tool for evaluation of MSP primer specificity
  MethSpec is a simple tool that carries out evaluation of MSP primer specificity based on primer pair's sequences and parameters such as: primer concentration, ion concentration and annealing temperature.
  
  
• TRI_tool - Transcriptional Regulation Interactions
  Transcriptional Regulation Interactions tool TRI_tool is an open-accessed web service for finding transcriptional regulation interactors.
  
  
• IDPpi_tool - Human Intrinsically Disordered Protein Interactions
  IDPpi_tool is an open-access web service for finding proteins, interactors of human intrinsically disordered protein.
  
  
• HP-GAS - Prediction of Human Protein protein interactions based on Genetic Algorithm driven Stacking method
  HP-GAS is a software for prediction of human protein protein interactions based on graph, evolutionary and sequence features. It uses the ensemble of models generated by machine learning (ML) algorithms, where automatic ensembling of ML algorithms is driven by genetic algorithm.
  
  
• DiNGO: standalone application for Gene Ontology and Human Phenotype Ontology term enrichment analysis
  DiNGO is a standalone application based on open source code from BiNGO a Java based tool aimed to determine which Gene Ontology (GO) categories are overrepresented in a set of genes.
  
  
• EpiMut: Alignment-independent tool for functional annotation of amino acid substitutions in epigenetic factors
  EpiMut is software for functional annotation of AASs in epigenetic factors that is independent from sequence alignments and homology search. It is based on the biochemical and physicochemical characteristics of amino acids and digital signal processing approach in protein sequence analysis.